Dartmouth Biological and Molecular Informatics Dartmouth Biological and Molecular Informatics Dartmouth Biological and Molecular Informatics

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Consulting and Computational Resources for:
Analysis, Simulation, Modeling, Visualization and
Database Mining in the Biological and Molecular Sciences 		BISR Mission Statement
BISR:
How to get Help?/Consultation
What's New!
Lectures/Courses
Events/Seminars
Systems Status
Current Projects
Past Projects
List of supported applications
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Dartmouth Links:
Computational Genetics Lab
Molecular Biology Core
NCCC Shared Resources
Research Computing
Center for Biological and Biomedical Computing
Biomedical Library

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Cancer Bioinformatics Related Sites:
• The National Cancer Institute (NCI)
• The NCI Center for Bioinformatics (NCICB) The NCI Center for Bioinformatics (NCICB) provides biomedical informatics support and integration capabilities to the cancer research community.
• The National Center for Biotechnology Information (NCBI)

Additional Resources:
• "WEB Servers - Nucleic Acids Research: The 2005 NAR Web Server (Vol. 33 July 2005) The current Issue includes a summary of web servers produced by Francis Ouellette and his colleagues at the UBC Bioinformatics Centre that complements the compilation of databases produced by Michael Galperin [Nucleic Acids Res. (2005) 33, D524]. The purpose of the latest Web Server Issue is to provide a repository where authors of web servers can highlight their offerings and readers can find out what is available.
• "Databases - Nucleic Acids Research: The 2006 Database Issue (Vol. 34 (1) January 2006) The 2006 The 2006 Database Issue of Nucleic Acids Research is the thirteenth in a series dedicated to databases in the field of molecular biology. These databases are an essential resource for experimental and computational biologists alike and this compilation provides descriptions and updates of the most important of these databases and serves to introduce newly compiled databases that provide specialist information in the biological area. The current issue is the largest yet and presents 94 new databases and updates of 68 existing databases.
Available Applications:

Genome Analysis
GCG/SeqWeb
  • Manipulation of nucleic acid and amino acid sequences
    •
  • DNA arrays: mutation screens, SNP analysis, structural analysis
    •  PAUP, MEGA (and other programs)
  • Phylogenetic analysis
    •

    Transcriptome Analysis
    Cancer Genome Anatomy Project
    Dartmouth's SMD server (comming soon)
    GeneTraffic Server
    Cyber-T
    Affy's NetAffyx tools
  • Expression analysis: genes (microarrays)
    Links from the Whitfield Lab
    (2004): Microarrays
    Other Suggested Reading (Reviews and Research Papers)


    Proteome Analysis
    MASCOT
  • Analysis of protein samples: proteins (mass spectrometry)
     Human Protein Reference Database
  • The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.
     InsightII
  • Structural Analysis: Protein Quantitative Structure-Activity Relationships (QSAR)
     Universal Protein Resource
  • (Central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR)
     Incyte's Proteome BioKnowledge® Library
  • The Proteome BioKnowledge® Library is a Proteome Survey Database

    Metabolome Analysis
  • Expression analysis: metabolites (mass spectrometry)

    Chemical Analysis
    Cambridge Structural Database (CSD)
  • Quantitative Structure Activity Relationships (QSAR)
  • Reaction Pathways

    Statistical Analysis
    Biostatistics Resources at Dartmouth
  • Online Information about Statistics
  • Web-Based Programs for some Common Statistical Procedures
  • Web-Based Programs Developed by Dartmouth Statistical Research
    Statistical Support (Research Computing)
  • Statistics Applications
     Statistical TextBook
  • Online Statistics Analysis Reference

    GIS
    GIS at Dartmouth

    		• Developer's Resources:

    Algorithms
    Wiki
    Fundamental
    NIST Dictionary


    Math Packages
    Mathematica
    MatLab


    Perl Code
    BioPerl

    Java Code
    BioJava

    Python Code
    BioPython

    Statistical Packages
    SAS
    JMP
    Stata
    SPSS


    Utility Apps
    AFS client for MacOSX

    AFS client for linux using rpm

    AFS client for Windows



    HPC development
    HPC Dev tools
    SDE Discovery
    Status


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    In Affiliation with
     • Norris-Cotton Cancer Center
     • Dartmouth Medical School
     • Dartmouth-Hitchcock Medical Center
    		Maintained by Computational Genetics Lab
    NCCC/Dartmouth Medical School/Dartmouth College
    Lebanon, New Hampshire 03756
    E-mail: dave.jewell@dartmouth.edu

    Copyright © 2002 Trustees of Dartmouth College